PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for EC 4.2.1.122 as complete word(s)

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Found 8 characterized proteins with matching descriptions. 2 of these are heteromeric.

Fetched 8 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 389-506 amino acids (2/7 heteromeric)

The first sequence in each cluster is the seed.

P50909 β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
P50909 tryptophan synthase (EC 4.2.1.20) from Thermotoga maritima
PFams: PALP
389 amino acids: PaperBLAST, CDD, Compare to cluster

b1261 tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli K-12 substr. MG1655
P0A879 tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli (strain K12)
P0A879 tryptophan synthase (EC 4.2.1.20) from Escherichia coli
PFams: PALP
397 amino acids: PaperBLAST, CDD, Compare to cluster

P14671 tryptophan synthase, beta subunit (EC 4.2.1.122) from Arabidopsis thaliana
P14671 tryptophan synthase (EC 4.2.1.20) from Arabidopsis thaliana
PFams: PALP
470 amino acids: PaperBLAST, CDD, Compare to cluster

Q5JDJ1 tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (subunit 1/2) (EC 4.2.1.20) from Thermococcus kodakarensis
PFams: PALP
Heteromeric, 442 amino acids: PaperBLAST, CDD, Compare to cluster

Q9FFW8 tryptophan synthase, beta subunit (EC 4.2.1.122) from Arabidopsis thaliana
Q9FFW8 tryptophan synthase (EC 4.2.1.20) from Arabidopsis thaliana
PFams: PALP
506 amino acids: PaperBLAST, CDD, Compare to cluster

Q9WZ09 tryptophan synthase β2 subunit (EC 4.2.1.122) from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: PALP
422 amino acids: PaperBLAST, CDD, Compare to cluster

Q9YGB0 tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Q9YGB0 tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (subunit 2/2) (EC 4.2.1.20) from Thermococcus kodakarensis
PFams: PALP
Heteromeric, 389 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

A0A2U8JPY3 tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (EC 4.2.1.20) from Psilocybe cubensis
PFams: Trp_syntA, PALP
700 amino acids: PaperBLAST, CDD